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Membrane Autopsy
Membrane autopsies play a crucial role in identifying and resolving issues within membrane systems. The process involves removing one or more membrane modules and conducting an in-depth analysis to detect mechanical, chemical, and operational problems through detailed destructive testing. Both the membrane material and fouling deposits are examined to determine the root cause of failure, allowing us to provide targeted recommendations for corrective action.
When Should You Conduct a Membrane Autopsy?
While all membrane systems experience performance decline over time, an autopsy is particularly valuable when facing:
- Poor permeate quality – Rejection rates drop, or permeate conductivity increases by more than 20% without improvement after a Clean-In-Place (CIP).
- Increased feed pressure – Feed pressure rises by over 20% and is not restored through CIP.
- High pressure drop (ΔP) within a module – A significant increase in differential pressure indicates restrictive fouling.
- Decreased treated water flow (low flux) – A drop in treated water flow by more than 20% that does not recover after CIP.
- Frequent cleaning cycles – CIP frequency increases, or its effectiveness declines.
- Recurring performance issues – Ongoing declines or failures without a clear root cause.
In these cases, identifying the underlying issue is crucial, as resolving it can lead to significant savings on labor, cleaning chemicals, and maintenance costs.
Beyond troubleshooting, a membrane autopsy is valuable for assessing performance at the conclusion of pilot trials, evaluating cleaning effectiveness, or investigating system upsets.

Failure of the hollow fibre membrane and potting material to bond

Gypsum scale blocking brine spacer

Severe surface fouling on an RO membrane

Severe biofouling on membrane surface

Entrained glass and carbon beads from broken MMF upstream

Severe Iron fouling on membrane surface

Brine spacer protrusion from fouled over pressure membrane

Clay and solids fouling of UF membrane
Autopsy Process
Our membrane autopsy is designed to thoroughly analyse your membrane, identify the root cause of failure, and provide clear recommendations for resolving the issue. This process is particularly valuable for ongoing performance problems that require deeper investigation.
From start to finish, we work closely with you, providing real-time updates as we gather insights. Initial feedback is often available within 3–4 days based on preliminary inspections, and as we uncover more details, we maintain open communication to build a shared understanding of potential causes. The process concludes with a comprehensive report and a detailed discussion with your team, outlining our findings, suspected failure mechanisms, and, most importantly, actionable steps for resolution.
Our Autopsy Process
While the autopsy is tailored to each client’s specific situation, it typically includes:
- Visual Inspection & Integrity Testing
- Internal and external examination for mechanical damage due to excessive pressure or flow.
- Pressure or vacuum decay tests to detect structural integrity issues.
- Ultrafiltration (UF) membrane testing for elongation to assess strength loss.
- Optional: Flux, salt rejection, and dye leak testing on a small membrane sample to identify hydrolysis or mechanical damage.
- Electron & Optical Microscopy
- Electron microscopy to analyse membrane surface contamination and mechanical defects.
- Energy Dispersive X-ray Spectroscopy (EDS) analysis to determine the elemental composition of deposits.
- Optical microscopy with specialised dyes to detect oil fouling and extracellular polymeric substances (EPS) from bacterial growth—especially useful for insoluble fouling like colloids and clays.
- Inorganic Analysis
- Extraction of inorganic scales, followed by elemental analysis to identify the types and concentrations of anions present—helping diagnose specific scaling issues.
- Organic Fouling Analysis
- Extraction of organic foulants (biological and chemical) to measuring organic fouling and oil/grease contamination.
- Bacterial activity testing to assess potential biological fouling
- Oxidative Damage Assessment
- Fujiwara test to detect halide oxidation damage to the membrane.
- If necessary, XPS (X-ray Photoelectron Spectroscopy) or FTIR (Fourier Transform Infrared Spectroscopy) for further confirmation.
Typically, the tail membrane experiences the most scaling, while the lead membrane is most affected by entrained solids and biological fouling. We thus offer discounts on additional membranes when analysing multiple modules.
Autopsy Tests
Weight Measurement
The membrane is weighed as received to determine the extent of scaling and fouling
Visual Inspection
The membrane in inspected by externally and internally. The product packaging is inspected for damage in transit and the external components of the element, including the fiberglass shell, ATD’s, and brine seal are inspected for damage incurred during operation. Looking at the feed and concentrate ends of the element before and after removal of the ATD’s allows us to see entrained material and suspended solids. Inspection of each individual membrane sheet is conducted to look for evidence of scaling, fouling, scratching, delamination and/or manufacturer defects. Inspection of the permeate spacer can give indications of mechanical damage.
Water Modelling
Water modelling is a powerful tool to understand not only the fouling present on the membrane but also how it can be managed through operational changes or through chemical cleaning or the use of antiscalants. We use the Proton Software that is the most powerful system available for modelling scale formation and allows us to determine fouling factors for many scale types as well as determine antiscalant dose requirements.
Modelling also gives us the expected ion concentrations in both the permeate and brine to identify problems and compare to field analysis.
Pressure Decay Test (vacuum)
A Pressure Decay Test (PDT) is performed to determine the mechanical integrity of the membrane. The membrane has a 30-40 kPa vacuum applied to the permeate tube and the rate at which this pressure decays gives an indication of mechanical damage that would let air through. This test can also be performed on UF/MF membranes depending on the module configuration.
Chemical Solubility Test
Samples collected from the membrane surface are tested for solubility in concentrated acid and caustic solutions. Information can be gathered about the nature of the foulant based on its solubility or dispersibility in different chemicals, and the resulting color of the solution. Effervescence in the presence of acid usually indicates the presence of carbonate salts such as calcium carbonate.
Flat Sheet Cell Testing
Cell testing is performed in order to look at the performance of the membrane. Samples of the membrane are collected from the element and tested using the testing conditions that are specified by the manufacturer. Salt rejection and flux measurements are then compared with the manufacturer’s specifications and with wet test data when available.
Dye Testing
In this test, a Rhodamine dye solution is applied under pressure to the feed side of the membrane sheet. If the membrane is damaged, the dye color will penetrate to the permeate side of the membrane. The pattern of dye penetration can be used to determine whether the nature of the membrane damage is chemical or mechanical.
Fujiwara Test
This test is determines whether the membrane surface has been oxidized by a halogen, such as Chlorine or Bromine.Â
Foulant Density
The foulant surface density is used to quantify the extent of fouling and/or scaling on the membrane surface by calculating the ratio of foulant mass to the surface area from which it was collected.
Loss On Ignition
A Loss on Ignition (LOI) test is performed to determine the organic/inorganic content of the foulant. The percentages of moisture, organics and inorganics are then calculated based on the loss of mass.
Humic and Fulvic Acid Test
This test is performed to determine the presence of humic and fulvic acids in the membrane foulant. Humic and fulvic acids are produced from the biodegradation of plant matter and, when present in the water, can foul the membrane.
Tensile Test (Hollow Fiber)
Tensile strength and elongation tests are performed on hollow fiber membranes to determine their strength and ductility. Our autopsies include an elongation at break test standard to look for chemical or pH degradation.
Scanning Electron Microscopy (SEM)
Scanning Electron Microscopy (SEM) analysis is used to investigate at a very low-level fouling present on the membrane surface. The SEM shows very detailed 3-dimensional images at much higher magnification than an optical microscope. This shows us membrane surface damage as well showing us what fouling are present and how they have formed. We combine this with Energy Dispersive Spectroscopy (EDS) to get the elemental composition of the different fouling components.
Energy Dispersive Spectroscopy (EDS)
Energy Dispersive X-ray Spectroscopy (EDS) analysis is performed together with electron microscopy to identify and quantify the elemental composition of a sample surface. The sample material is bombarded with electrons from an SEM which produce X-rays. The produced X-rays are then measured by an X-ray dispersive spectrometer. Every chemical element has its own characteristic wavelength by which it can be identified.
Optical Microscopy
Membrane samples are analysed using a microscope to look at detailed surface fouling. The samples are can also be stained with a range of dyes that allow us to highlight specific foulants. In particular EPS and bacterial slimes.
X-Ray Diffraction (XRD)
X-Ray Diffraction (XRD) analysis is a technique used to characterize crystal structure and size of a sample. Its a method to positively identify a fouling mineral and can be used to identify the presence of multiple phases where different crystalline compounds coexist.
XRD is based on observing the intensity of an X-ray beam hitting a sample as a function of incident and scattered angle, polarization, and wavelength or energy.
Fourier Transform Infrared Spectrometer (FTIR)
In the membrane autopsy process, the FTIR is a powerful tool for identifying types of chemical bonds (functional groups). The wavelength of light absorbed is characteristic to the chemical bond. The tested material can be identified by comparing its spectrum to the spectra of documented compounds in the database.
Bacterial Activity (TVC/HPC)
This analysis gives a quantitative estimate of the concentration of microorganisms such as bacteria, yeast or mould spores in a sample. The count represents the number of colony forming units (cfu) per g (or per ml) of the sample. This uses a nutrient rich agar that promotes bacterial growth along with an indicator that changes colour when the bacteria are present. The agar plates are inoculated and then incubated for 48h at 35C.
Multiple dilutions are conducted until between 30 and 300 colonies can be counted on a single plate. The reported count is the number of colonies counted multiplied by the dilution used for the counted plate
A high TVC count indicates a high concentration of micro-organisms which may indicate bacterial fouling.
Fouling extraction analysis
Both inorganic and organic fouling materials are extracted from the membrane and then analysed by a range of techniques including Inductively Coupled Plasma (ICP) and Dissolved Organic Carbon (DOC) analysis. This allows us to see what inorganic fouling is present, whether its scale or entrained, as well as how much organic or biological material is present. In combination with other techniques it allows us to break down mixed fouling and understand how best to approach cleaning it.
X-ray Photoelectric Spectroscopy (XPS)
X-ray Photoelectric Spectroscopy (XPS) is a technique that bombards a membrane sample with x-rays which excites the electrons which in turn emit light that can be analysed to identify not only the elements present but also what form that they are in and what they are bonded to. This can be particularly useful in looking at damage to the active membrane layer caused by hydrolysis of oxidation. We often use this to analyse for halide oxidative damage.
Standardised Flux and Salt Rejection
This analysis takes a membrane and tests it under a standardized set of conditions supplied by the manufacturer that are used as a benchmark for their new membranes. By comparing the flux and salt rejection to that of a new membrane we can look for hydrolysis and other damage that can be hard to identify analytically. This also provides a standardized performance result that can help understand if a performance problem is driven by operation conditions or the physical condition of the membrane.
Contact us today to explore how we can improve the performance and longevity of your systems.